[ensembl-dev] help for newbie with orthologs

[Wasiu Akanni]

Hi Bob,

This page contains all the methods associated with our homology object 
and how they are called

http://www.ensembl.org/info/docs/Doxygen/compara-api/classBio_1_1EnsEMBL_1_1Compara_1_1Homology.html

Let me know if you need any other information


On 07/11/2017 16:21, Bob Stephens wrote:
> Hello,
> I am just getting started with the core and compare APIs. I would like 
> to programmatically reproduce the nice table produced online for a 
> list of a gene's orthologs showing the parent species, the orthodox 
> id, the type of orthodox (eg. 1:1 etc.) and the pct ID and DN/DS 
> information. I am having trouble locating the documentation listing 
> the available attributes associated with the homology objects such 
> as $homology->description or taxonomy_level, ends_ratio etc. or 
> alternatively, is there a method that returns all attribute-value 
> pairs that I can select from for the table ? sorry for the very basic 
> question and thanks for the help
> Bob
>
>
>
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