[ensembl-dev] Error when trying to access SNPs

[Emily Perry]

Hi Lee

Please do not email both helpdesk and dev with the same message. You 
have wasted Anja's time by making her help you when I had already solved 
your problem.

All the best

Emily


On 16/05/2017 13:30, Lee Stopak wrote:
> Hi Anja,
>
> I have got it working. I had the packages set up incorrectly at the top.
>
> Thanks anyways :)
>
> Lee
>
> On Tue, May 16, 2017 at 1:37 PM, Anja Thormann <anja at ebi.ac.uk 
> <mailto:anja at ebi.ac.uk>> wrote:
>
>     Hello Lee,
>
>     could you please share the code that you are running to retrieve
>     the variant data? It looks to me as if the variation adaptor is
>     not defined.
>
>     Thank you,
>     Anja
>
>>     On 11 May 2017, at 17:56, Lee Stopak <lee.stopak at ada.com
>>     <mailto:lee.stopak at ada.com>> wrote:
>>
>>     Hi all,
>>
>>     I have just installed BioPerl to use Ensembl API to access SNP
>>     information that I need for a project that I am working on. I
>>     have followed all the prompts, and am trying to use the sample
>>     code to access variants, using the ‘fetch_by_name’ function.
>>     However, I am getting an error response:
>>
>>     Can't call method "fetch_by_name" on an undefined value
>>
>>     Many other functions are working and running, for example getting
>>     by chromosome ID. Can somebody give me some advice on why this is
>>     happening?
>>
>>     Thank you,
>>
>>     Lee
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-- 
Dr Emily Perry (Pritchard)
Ensembl Outreach Project Leader

European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge
CB10 1SD
UK

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