[ensembl-dev] Sequence for ENSMUST00000198176 not in FASTA files
mag
mr6 at ebi.ac.uk
Wed May 10 09:33:37 BST 2017
Hi Charlie,
The transcript ENSMUST00000198176 has a biotype TEC, which stands for To
Be Experimentally Confirmed.
Due to its ambiguous nature, transcripts of that biotype are not part of
any of our biotype classifications, hence not dumped out in the FASTA files.
We are currently reviewing this decision and might be able to provide
the sequence in future releases.
Kind regards,
Magali
On 10/05/2017 04:57, Charles Joseph Murphy wrote:
> Hi,
>
> I notices that for GRCm38 release 88 the sequence for the
> transcript ENSMUST00000198176 is not present in any of the following
> files:
>
> ftp://ftp.ensembl.org/pub/release-88/fasta/mus_musculus/ncrna//Mus_musculus.GRCm38.ncrna.fa.gz
> ftp://ftp.ensembl.org/pub/release-88/fasta/mus_musculus/cdna//Mus_musculus.GRCm38.cdna.abinitio.fa.gz
> ftp://ftp.ensembl.org/pub/release-88/fasta/mus_musculus/cdna//Mus_musculus.GRCm38.cdna.all.fa.gz
> ftp://ftp.ensembl.org/pub/release-88/fasta/mus_musculus//cds/Mus_musculus.GRCm38.cds.all.fa.gz
>
> What is the reason?
>
> Thanks,
> Charlie
>
>
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