[ensembl-dev] study estd214, chrX and Y

[Laurent Gil]

Dear Maxime,

This is simply because we don't have data on the chromosomes X and Y for 
the study estd214 on GRCh38.
At the time we got the structural variants for this study (i.e. in early 
2016), there was some issues to map the GRCh37 X and Y chromosome data 
to GRCh38.
That's why we didn't import it in our database.

Apologies for the missing data. We will try to add them in the next 
Ensembl releases.

Best regards,

Laurent

On 10/03/2017 10:58, Maxime Bodinier wrote:
> Hi,
>
> I'm facing an issue with the access to chromosomes X and Y data from the study estd214.
>
> To illustrate this, I'll take the exemple of  esv3817625, a Copy Number Variation from chr X :
>> it exists on NCBI servers (cf https://www.ncbi.nlm.nih.gov/dbvar/variants/esv3817625/)
>> but not on yours (cf http://www.ensembl.org/Multi/Search/Results?q=esv3817625;site=ensembl;page=1)
> Biomart also shows the absence of Variations data from estd214 for chrX and Y (it works for other chr).
>
> Maybe you have an idea about why I get this issue.
>
> Thank you for your help,
>
> Maxime BODINIER
> Master Student at the University of Rouen, FR
>
>
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