[ensembl-dev] Is Bio::EnsEMBL::Registry needed to connect to database?

[Zhicheng Liu]

Hi Mahmood,

Have you tried following the item “3. Set up your environment” under the “Installation Procedure” section on this page? 
http://www.ensembl.org/info/docs/api/api_installation.html <http://www.ensembl.org/info/docs/api/api_installation.html>

The Bio/EnsEMBL/Registry.pm should be located at ${HOME}/src/ensembl/modules.

Hope this helps!

Regards,
Zhicheng
.

> On 27 Jun 2017, at 20:27, Mahmood Naderan <mahmood.nt at gmail.com> wrote:
> 
> Hello,
> I finished installing the API according to http://www.ensembl.org/info/docs/api/api_installation.html <http://www.ensembl.org/info/docs/api/api_installation.html>
> 
> As I wrote a simple script to connect to the database, I get this error
> 
> Can't locate Bio/EnsEMBL/Registry.pm in @INC (@INC contains: /opt/perl/lib/site_perl/5.14.2/x86_64-linux-thread-multi /opt/perl/lib/site_perl/5.14.2 /opt/perl/lib/5.14.2/x86_64-linux-thread-multi /opt/perl/lib/5.14.2 .) at test.pl <http://test.pl/> line 1.
> BEGIN failed--compilation aborted at test.pl <http://test.pl/> line 1.
> 
> 
> That is correct because there is no Bio::EnsEMBL in the cpan list.
> 
> [root at cluster ~]# /opt/perl/bin/cpan -a | grep Bio::EnsEMBL
> [root at cluster ~]#
> 
> 
> It has not been stated in the installation guide that such package is needed. What should I do? 
> Is it OK to run "cpanm Bio::EnsEMBL::Registry"? I want to be sure that it is safe to do that.
> 
> P.S: Sorry for sending a lot of questions. These may seems obvious and easy to solve, but for a newbie it takes a while to boot!
> 
> 
> Regards,
> Mahmood
> 
> 
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