[ensembl-dev] Changes in EMBL file format?

Anne Lyle annelyle at ebi.ac.uk
Thu Jun 15 09:16:25 BST 2017


Hi Fin

This was a deliberate change to more closely match INSDC specifications, so it’s not a bug :)

My colleagues on the core API team who made the change to the sequence dumper may be able to supply more details if you’re interested.

Cheers

Anne



Anne Lyle
Web Developer
Ensembl
www.ensembl.org <http://www.ensembl.org/>


> On 15 Jun 2017, at 05:25, Fin Swimmer <ensembl at need-login.de> wrote:
> 
> Hello,
> 
> I often export gene informations from ensembl in the EMBL file format. I
> realized that, since the last ensembl update, the transcript id's now
> have the key /standard_name in the mRNA or misc_RNA part, whereas in the
> CDS part /note="transcript_id= is still used.
> 
> Is this change a bug or a feature?
> 
> fin swimmer
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> Posting guidelines and subscribe/unsubscribe info: http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20170615/8ed2e1e9/attachment.html>


More information about the Dev mailing list