[ensembl-dev] Number of ENSGENE ID

[Thibaut Hourlier]

Hi Pankaj
Which Ensembl release did you use for your analyses?

In the latest release, e89, there is around 20,000 protein coding genes in the human genome and almost 40,000 pseudogenes and non coding genes.

Thanks
Thibaut

> On 7 Jun 2017, at 16:26, Pankaj Agarwal <p.agarwal at duke.edu> wrote:
> 
> Hi,
> I am using Ensembl human reference genome and annotation for alignment and mapping rna-seq data.  In my results I get ~ 60,000 unique ENSG ID.  I am wondering why there are so many more than ~ 20,000 genes in the human genome.
> Thanks,
> - Pankaj
>  
> ----------------------------------------------------------------
> Pankaj Agarwal, M.S
> Bioinformatician
> Database Analyst II
> Surgical Sciences Applied Therapeutics Section
> Department of Surgery
> Duke University
> 919-681-2251
> p.agarwal at duke.edu <mailto:p.agarwal at duke.edu>
>  
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