[ensembl-dev] VEP Request: Summary Statistics by Biotype

[Will McLaren]

Hi Trevor,

What specifically would you like to see - a breakdown of consequence types
by biotype? Or just an overall summary of the number of each biotype
overlapped?

It would also be fairly straightforward to create these stats yourself from
a VEP output file by isolating the relevant fields and counting the
instances.

Regards

Will McLaren
Ensembl Variation

On 18 September 2016 at 21:13, Trevor Tanner <u0597274 at utah.edu> wrote:

> Greetings,
>
> I am just wondering if "Summary Statistics" by biotype (especially
> non-coding RNA) could be added to VEP's summary statistics?  For example,
> right now I am using the "intergenic_variant" number in some analyses, but
> I am worried that the number will change as new non-coding RNAs are added
> to Ensembl's database.
>
> Any help would be more than appreciated.
>
> Thank you,
> Trevor Tanner
>
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