[ensembl-dev] Branch lengths in Ensembl Compara species tree

[Greg Slodkowicz]

Hi Matthieu,
Thanks for getting back to me. In the meantime I had Mateus explain to me
that these are nucleotide substitution per site.

Cheers,
Greg

On Fri, Nov 25, 2016 at 4:39 PM Matthieu Muffato <muffato at ebi.ac.uk> wrote:

Hi Greg,

The branch lengths come from phyloFit on aligned DNA sequences. They are
substitution rates

Matthieu

On 21/11/16 14:47, Greg Slodkowicz wrote:
> Hi all,
> I was wondering if what unit are the branch lengths in the mammalian
> species given
> at
https://github.com/Ensembl/ensembl-compara/blob/release/86/scripts/pipeline/species_tree.39mammals.branch_len.nw
?
>
> Many thanks,
> Greg
>

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