[ensembl-dev] VEP error

Will McLaren wm2 at ebi.ac.uk
Mon May 23 12:58:36 BST 2016


Hi Matteo,

Remove the --debug flag from your command line; this is intended for use
only by VEP developers.

Regards

Will McLaren
Ensembl Variation

On 23 May 2016 at 12:35, Matteo <matteodeg at gmail.com> wrote:

> Hi all,
> I'm using the last VEP version (84).
> I get this error:
>
> Negative repeat count does nothing at
> ~/NGS_TOOLS/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio/EnsEMBL/Variation/Utils/VEP.pm
> line 6906.
> [>                                              ]    [ 0% ]Negative repeat
> count does nothing at
> /home/jarvis/NGS_TOOLS/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio/EnsEMBL/Variation/Utils/VEP.pm
> line 6906.
> [>                                              ]    [ 0% ]Negative repeat
> count does nothing at
> /home/jarvis/NGS_TOOLS/ensembl-tools-release-84/scripts/variant_effect_predictor/Bio/EnsEMBL/Variation/Utils/VEP.pm
> line 6906.
> [===============================================]  [ 100% ]
>
> However, the annotation seems to be ok. Any idea?
> Thanks,
>
> Matteo
>
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