[ensembl-dev] mfa genome cache
wm2 at ebi.ac.uk
Mon Mar 21 15:40:40 GMT 2016
We're not producing caches for pre! species at the moment.
You can generate your own from the GTF and FASTA files using gtf2vep.pl
ftp://ftp.ensembl.org/pub/pre/fasta/dna/macaca_fascicularis/ (you need
You can try using the RefSeq GFF but historically this has proved
problematic for our parser.
On 21 March 2016 at 15:25, Schmucki, Roland <roland.schmucki at roche.com>
> Are you planning to add the Macaca fascicularis as a pre-built cache for
> Possibly the RefSeq version 5.0
> Many thanks and kind regards,
> Roland Schmucki, PhD
> Computational Biologist, Pharmaceutical Sciences
> Roche Pharma Research and Early Development
> Roche Innovation Center Basel
> F. Hoffmann-La Roche Ltd
> Grenzacherstrasse 124
> 4070 Basel
> Phone +41 61 687 13 30
> Confidentiality Note: This message is intended only for the use of the
> named recipient(s) and may contain confidential and/or proprietary
> information. If you are not the intended recipient, please contact the
> sender and delete this message. Any unauthorized use of the information
> contained in this message is prohibited.
> Dev mailing list Dev at ensembl.org
> Posting guidelines and subscribe/unsubscribe info:
> Ensembl Blog: http://www.ensembl.info/
-------------- next part --------------
An HTML attachment was scrubbed...
More information about the Dev