[ensembl-dev] using REST to get EPO multispecies alignment

mhobbs_science at optusnet.com.au mhobbs_science at optusnet.com.au
Thu Mar 10 08:54:34 GMT 2016


Hi,

I am trying to retrieve an EPO multispecies alignment using the REST
API
(http://rest.ensembl.org/documentation/info/genomic_alignment_region).


The example on this page
(http://rest.ensembl.org/documentation/info/compara_species_sets)
gives allowable values for the "species_set_group
" parameter and I would like to use "17 eutherian mammals EPO".

This is what  

~: wget
'http://rest.ensembl.org/alignment/region/homo_sapiens/8:144276224-144276304?content-type=application/json;aligned=0&method=EPO&species_set_group=17
eutherian mammals EPO' -O -
--2016-03-10 19:50:30-- 
http://rest.ensembl.org/alignment/region/homo_sapiens/8:144276224-144276304?content-type=application/json;aligned=0&method=EPO&species_set_group=17%20eutherian%20mammals%20EPO
Resolving rest.ensembl.org (rest.ensembl.org)... 193.62.54.30
Connecting to rest.ensembl.org (rest.ensembl.org)|193.62.54.30|:80...
connected.
HTTP request sent, awaiting response... 400 Bad Request
2016-03-10 19:50:33 ERROR 400: Bad Request.

What am I doing wrong? Thanks for any suggestions.

Matthew

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