[ensembl-dev] Ensembl VM possible to use for house Ensembl installation?

Antolin porto antolin.porto at gmail.com
Wed Jun 8 21:23:35 BST 2016


Guay
El 8/6/2016 10:22 p. m., "Matthew Laird" <lairdm at ebi.ac.uk> escribió:

> Hello Mingyi,
>
> Indeed the VM is intended to assist users in rapidly using the API, users
> who might be running Windows or not want to install the API locally, the VM
> lets them prototype or rapidly start using the API with minimal effort. As
> you've discovered it's not intended to be a local Ensembl mirror, it's a
> client side installation.
>
> Installing a mirror is actually even easier than setting up the API, dumps
> of all the Ensembl databases are available on our ftp site at
> ftp://ftp.ensembl.org/pub/current_mysql/ And instructions for loading
> them in to a local MySQL instance are available at
> http://www.ensembl.org/info/docs/webcode/mirror/install/ensembl-data.html
> Once that's done, all you need to do is point the Registry at your local
> instance rather than one of the public mirrors, and voila, you have your
> own mirror of an Ensembl release.
>
> If you have any other questions don't hesitate to drop us another message.
>
> On 16-06-08 08:33 PM, Liu, Mingyi wrote:
>
> Hi, can anyone confirm my question below? Are the Ensembl VMs only for
> Ensembl API + Ensembl’s own MySQL access, or the VM has everything needed
> for in-house Ensembl installation (one just need to change some parameters
> to point to in-house MySQL etc)? If the latter that’d be fantastic, but so
> far it doesn’t look like the case.
>
>
>
> Thanks!
>
>
>
> Mingyi
>
>
>
> *From:* Liu, Mingyi
> *Sent:* Tuesday, June 07, 2016 1:48 PM
> *To:* Ensembl developers list <dev at ensembl.org> <dev at ensembl.org>
> *Subject:* Ensembl VM possible to use for house Ensembl installation?
>
>
>
> Hi,
>
>
>
> I downloaded Ensembl VMs in the hope that this is an easy way to set up
> Ensembl in-house (once MySQL data are all downloaded/imported). However it
> seems that the VM doesn’t have webserver and is only meant to be used for
> running scripts that utilize Ensembl API?  Is that correct? I’m a bit
> confused as I thought one doesn’t need a VM to run scripts using Ensembl
> API, just need to download Ensembl/Bioperl and install dependency. So the
> VM is mostly for saving efforts installing dependency?
>
>
>
> Thanks!
>
>
>
> Mingyi
> ------------------------------
> This message (including any attachments) may contain confidential,
> proprietary, privileged and/or private information. The information is
> intended to be for the use of the individual or entity designated above. If
> you are not the intended recipient of this message, please notify the
> sender immediately, and delete the message and any attachments. Any
> disclosure, reproduction, distribution or other use of this message or any
> attachments by an individual or entity other than the intended recipient is
> prohibited.
>
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> Posting guidelines and subscribe/unsubscribe info: http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/
>
>
>
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> Posting guidelines and subscribe/unsubscribe info:
> http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20160608/e78ff84c/attachment.html>


More information about the Dev mailing list