[ensembl-dev] loading VEP output into db
Nikolas Pontikos
n.pontikos at ucl.ac.uk
Wed Jul 27 12:24:56 BST 2016
I'm looking for an easy way (with minimal reformatting) of loading the
output of VEP into a database.
So far I have tried loading the JSON output straight into mongo but
was wondering if there was a simpler tab separated format with one
transcript per line.
Maybe I should resort to only retrieving the most severe transcript
consequence per variant.
I'd be happy to hear your suggestion.
Many Thanks,
Nikolas.
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