[ensembl-dev] VEP web interface problems

[Watal M. Iwasaki]

Dear Will,

Thank you for the quick and kind reply. Now I see the situation.

Best,
Watal


On Fri, Jul 15, 2016 at 5:07 PM, Will McLaren <wm2 at ebi.ac.uk> wrote:

> Hello,
>
> Thanks for the feedback.
>
> On 15 July 2016 at 04:02, Watal M. Iwasaki <heavy.watal at gmail.com> wrote:
>
>> Hello,
>>
>> I am using VEP on grch37.ensembl.org with Safari, Mac 10.11 and have 3
>> suggestions/questions.
>>
>> 1) When "Find co-located known variants" is disabled, the checkboxes
>> below are hidden and `--pubmed` is left enabled by default. I think it is
>> counter-intuitive.
>>
>
> Thanks for spotting this - we'll look to get it fixed.
>
>
>>
>> 2) It would be helpful if the users can check "Command line equivalent"
>> before throwing a job.
>>
>
> This would be reasonably difficult to implement, and I think most users
> are not interested in the command line being used - the current way it
> works is provided for those who would like to transition from using the web
> interface to using the command line script.
>
>
>>
>> 3) Is there a way to download a result in gzipped VEP? The following
>> command did not work: `wget -O- "
>> http://grch37.ensembl.org/Homo_sapiens/Download/Tools/VEP?format=vep;tl=***"
>> | gzip >result.vep.gz`
>>
>
> Unfortunately results can currently only be downloaded uncompressed.
>
> Regards
>
> Will McLaren
> Ensembl Variation
>
>
>>
>> Thanks,
>>
>> --
>> Watal M. Iwasaki / 岩嵜 航
>> SOKENDAI, Graduate University for Advanced Studies,
>> Hayama, Kanagawa 240-0193, Japan
>> +81-46-858-1576
>> https://heavywatal.github.io/
>>
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>>
>
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>


-- 
Watal M. Iwasaki / 岩嵜 航
SOKENDAI, Graduate University for Advanced Studies,
Hayama, Kanagawa 240-0193, Japan
+81-46-858-1576
https://heavywatal.github.io/
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