[ensembl-dev] "Too many concurrent connections" errors when using get_all_Alleles()
Will McLaren
wm2 at ebi.ac.uk
Thu Jul 7 16:57:21 BST 2016
Hi Andrew,
Strange, are you able to share your test script?
Another solution is to download the VCF files that are being opened over
the FTP connection [1] and modifying the config file in
ensembl-variation/modules/Bio/EnsEMBL/Variation/DBSQL/vcf_config.json to
point to the path where you downloaded the files.
Cheers
Will
[1] : ftp://ftp.ensembl.org/pub/variation_genotype/homo_sapiens/ or for
GRCh37
ftp://ftp.ensembl.org/pub/grch37/release-82/variation/vcf/homo_sapiens/1000GENOMES-phase_3-genotypes/
On 7 July 2016 at 13:49, <andrew126 at mac.com> wrote:
> Hi Will,
>
> Thanks for the response.
>
> I've updated to the latest fixes, but I'm still getting these errors using
> the same code.
>
> Is there anything else I can try?
>
> Thanks,
>
> Andrew
>
> andrew at ubuntu1404-64-ak:~/gte/src$ git ensembl --pull api
> * Processing 'api'
>
> * Working with module 'ensembl'
> * Performing pull
> Already up-to-date.
>
> * Working with module 'ensembl-compara'
> * Performing pull
> Already up-to-date.
>
> * Working with module 'ensembl-funcgen'
> * Performing pull
> Already up-to-date.
>
> * Working with module 'ensembl-io'
> * Performing pull
> Already up-to-date.
>
> * Working with module 'ensembl-variation'
> * Performing pull
> Already up-to-date.
>
> perl tryit_crash.pl > tic.out &
> [2] 3517
> andrew at ubuntu1404-64-ak:~/gte$ UNIVERSAL->import is deprecated and will
> be removed in a future perl at
> /home/andrew/gte/src/bioperl-live/Bio/Tree/TreeFunctionsI.pm line 94.
> Subroutine Tabix::tabix_open redefined at
> /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.
> Subroutine Tabix::tabix_close redefined at
> /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.
> Subroutine Tabix::tabix_query redefined at
> /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.
> Subroutine Tabix::tabix_read redefined at
> /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.
> Subroutine Tabix::tabix_getnames redefined at
> /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.
> Subroutine TabixIterator::tabix_iter_free redefined at
> /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.
> [kftp_connect_file] 530 You may not have more than 15 concurrent
> connections at any time.
> [kftp_connect_file] 530 You may not have more than 15 concurrent
> connections at any time.
> [main] fail to open the data file.
> Tabix::tabix_query: t is not of type tabix_tPtr at
> /home/andrew/gte/src/ensembl-io/modules/Bio/EnsEMBL/IO/TabixParser.pm line
> 70.
>
>
>
> On Jul 7, 2016, at 6:35 AM, Will McLaren <wm2 at ebi.ac.uk> wrote:
>
> Hi Andrew,
>
> We added a fix for this in the release/84 code ([1] if you're interested)
> that limits the number of concurrent VCF connections to 2. If you are on
> release/84, use git pull in the ensembl-variation directory to get the
> latest fixes.
>
> If you are using an earlier version of the API, I'd suggest you update to
> 84.
>
> Regards
>
> Will McLaren
>
> [1] :
> https://github.com/Ensembl/ensembl-variation/commit/cd6813a66ca2cead9dc4da4e3a7bfa965b78f2ae
>
> On 6 July 2016 at 20:50, <andrew126 at mac.com> wrote:
>
>> Hi,
>>
>> I'm using API 84 on 64-bit Ubuntu.
>>
>> uname -a
>> Linux ubuntu1404-64-ak 4.2.0-27-generic #32~14.04.1-Ubuntu SMP Fri Jan 22
>> 15:32:26 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux
>>
>> The below script reliably generates errors because of the number of
>> concurrent connections. If get_all_Alleles() is not called, then no errors
>> are experienced. I think other similar calls also generate these errors,
>> but this is a simple example to get started.
>>
>> Posted below the script is an example of the error messages encountered.
>>
>> Is there a way to accomplish the same goal (summary of all alleles for
>> each variant) without generating such errors?
>>
>> Please let me know if any other information would be useful.
>>
>> Thanks for any help,
>>
>> Andrew
>>
>>
>> use strict;
>> $|=1;
>> use IPC::Run;
>> use Bio::EnsEMBL::Registry;
>> use Bio::EnsEMBL::ApiVersion;
>> printf( "The API version used is %s\n", software_version() );
>>
>> my $registry = 'Bio::EnsEMBL::Registry';
>> $registry->load_all();
>> $registry->set_reconnect_when_lost();
>> $registry->load_registry_from_db(
>> -host => 'useastdb.ensembl.org',
>> -user => 'anonymous'
>> );
>>
>> my $gene_adaptor = $registry->get_adaptor('homo_sapiens','core','gene');
>> my $slice_adaptor = $registry->get_adaptor('homo_sapiens','core','slice');
>>
>> my $slice = $slice_adaptor->fetch_by_region( 'chromosome', "4",
>> 139000000, 139100000);
>>
>> print "Variation:\n";
>>
>> my $vf_adaptor = $registry->get_adaptor( 'human', 'variation',
>> 'variationfeature' );
>> $vf_adaptor->db->use_vcf(1);
>> my $vars = $vf_adaptor->fetch_all_by_Slice($slice);
>>
>> foreach my $vf (@{$vars}){
>> print "\t".$vf->variation_name(),"\n";
>> print "\t".$vf->allele_string(),"\n";
>> print "\tChromosome: ".$slice->seq_region_name."\n";
>> print "\tStart-End:
>> ".$vf->seq_region_start."-".$vf->seq_region_end."\n";
>> print "\tConsequences: ".join(",",@{$vf->consequence_type()}),"\n";
>> if (1==1) {
>> my $alleles = $vf->variation->get_all_Alleles();
>> foreach my $allele (@{$alleles}) {
>> next unless (defined $allele->population);
>> my $allele_string = $allele->allele;
>> my $frequency = $allele->frequency || 'NA';
>> my $population_name = $allele->population->name;
>> printf("\tAllele %s has frequency: %s in population %s.\n",
>> $allele_string, $frequency, $population_name);
>> }
>> }
>> print "\n";
>> }
>>
>>
>>
>>
>>
>>
>> andrew at ubuntu1404-64-ak:~/gte$ perl tryit_crash.pl > tic.out &
>> [2] 3059
>> andrew at ubuntu1404-64-ak:~/gte$ UNIVERSAL->import is deprecated and will
>> be removed in a future perl at
>> /home/andrew/gte/src/bioperl-live/Bio/Tree/TreeFunctionsI.pm line 94.
>> Subroutine Tabix::tabix_open redefined at
>> /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.
>> Subroutine Tabix::tabix_close redefined at
>> /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.
>> Subroutine Tabix::tabix_query redefined at
>> /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.
>> Subroutine Tabix::tabix_read redefined at
>> /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.
>> Subroutine Tabix::tabix_getnames redefined at
>> /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.
>> Subroutine TabixIterator::tabix_iter_free redefined at
>> /home/andrew/gte/src/lib/perl/5.18.2/Tabix.pm line 17.
>> [kftp_connect_file] 530 You may not have more than 15 concurrent
>> connections at any time.
>> [main] fail to open the data file.
>> [kftp_connect_file] 530 You may not have more than 15 concurrent
>> connections at any time.
>> *** buffer overflow detected ***: perl terminated
>> ======= Backtrace: =========
>> /lib/x86_64-linux-gnu/libc.so.6(+0x7338f)[0x7f7fcd13138f]
>> /lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x5c)[0x7f7fcd1c8c9c]
>> /lib/x86_64-linux-gnu/libc.so.6(+0x109b60)[0x7f7fcd1c7b60]
>> /lib/x86_64-linux-gnu/libc.so.6(+0x10abe7)[0x7f7fcd1c8be7]
>>
>> /home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so(+0xaebd)[0x7f7fc8011ebd]
>>
>> /home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so(+0xb0aa)[0x7f7fc80120aa]
>>
>> /home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so(knet_read+0xb8)[0x7f7fc8012c18]
>>
>> /home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so(bgzf_read_block+0x165)[0x7f7fc8010c25]
>>
>> /home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so(bgzf_getline+0x37)[0x7f7fc8011cc7]
>>
>> /home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so(ti_iter_read+0xd2)[0x7f7fc8010172]
>>
>> /home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so(+0x3368)[0x7f7fc800a368]
>> /usr/lib/libperl.so.5.18(Perl_pp_entersub+0x596)[0x7f7fcd53c866]
>> /usr/lib/libperl.so.5.18(Perl_runops_standard+0x16)[0x7f7fcd534e86]
>> /usr/lib/libperl.so.5.18(perl_run+0x254)[0x7f7fcd4cd714]
>> perl(main+0x149)[0x400dd9]
>> /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5)[0x7f7fcd0dfec5]
>> perl[0x400e11]
>> ======= Memory map: ========
>> 00400000-00402000 r-xp 00000000 fc:00 133596
>> /usr/bin/perl
>> 00601000-00602000 r--p 00001000 fc:00 133596
>> /usr/bin/perl
>> 00602000-00603000 rw-p 00002000 fc:00 133596
>> /usr/bin/perl
>> 01805000-061dc000 rw-p 00000000 00:00 0
>> [heap]
>> 7f7fc4000000-7f7fc4021000 rw-p 00000000 00:00 0
>> 7f7fc4021000-7f7fc8000000 ---p 00000000 00:00 0
>> 7f7fc8007000-7f7fc8015000 r-xp 00000000 fc:00 532847
>> /home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so
>> 7f7fc8015000-7f7fc8214000 ---p 0000e000 fc:00 532847
>> /home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so
>> 7f7fc8214000-7f7fc8215000 r--p 0000d000 fc:00 532847
>> /home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so
>> 7f7fc8215000-7f7fc8216000 rw-p 0000e000 fc:00 532847
>> /home/andrew/gte/src/lib/perl/5.18.2/auto/Tabix/Tabix.so
>> 7f7fc8216000-7f7fc822b000 r-xp 00000000 fc:00 260284
>> /usr/lib/perl/5.18.2/auto/Storable/Storable.so
>> 7f7fc822b000-7f7fc842a000 ---p 00015000 fc:00 260284
>> /usr/lib/perl/5.18.2/auto/Storable/Storable.so
>> 7f7fc842a000-7f7fc842b000 r--p 00014000 fc:00 260284
>> /usr/lib/perl/5.18.2/auto/Storable/Storable.so
>> 7f7fc842b000-7f7fc842c000 rw-p 00015000 fc:00 260284
>> /usr/lib/perl/5.18.2/auto/Storable/Storable.so
>> 7f7fc842c000-7f7fc842e000 r-xp 00000000 fc:00 260313
>> /usr/lib/perl/5.18.2/auto/attributes/attributes.so
>> 7f7fc842e000-7f7fc862d000 ---p 00002000 fc:00 260313
>> /usr/lib/perl/5.18.2/auto/attributes/attributes.so
>> 7f7fc862d000-7f7fc862e000 r--p 00001000 fc:00 260313
>> /usr/lib/perl/5.18.2/auto/attributes/attributes.so
>> 7f7fc862e000-7f7fc862f000 rw-p 00002000 fc:00 260313
>> /usr/lib/perl/5.18.2/auto/attributes/attributes.so
>> 7f7fc862f000-7f7fc863d000 r-xp 00000000 fc:00 311765
>> /usr/lib/perl5/auto/JSON/XS/XS.so
>> 7f7fc863d000-7f7fc883c000 ---p 0000e000 fc:00 311765
>> /usr/lib/perl5/auto/JSON/XS/XS.so
>> 7f7fc883c000-7f7fc883d000 r--p 0000d000 fc:00 311765
>> /usr/lib/perl5/auto/JSON/XS/XS.so
>> 7f7fc883d000-7f7fc883e000 rw-p 0000e000 fc:00 311765
>> /usr/lib/perl5/auto/JSON/XS/XS.so
>> 7f7fc883e000-7f7fc884c000 r-xp 00000000 fc:00 260173
>> /usr/lib/perl/5.18.2/auto/Compress/Raw/Zlib/Zlib.so
>> 7f7fc884c000-7f7fc8a4b000 ---p 0000e000 fc:00 260173
>> /usr/lib/perl/5.18.2/auto/Compress/Raw/Zlib/Zlib.so
>> 7f7fc8a4b000-7f7fc8a4c000 r--p 0000d000 fc:00 260173
>> /usr/lib/perl/5.18.2/auto/Compress/Raw/Zlib/Zlib.so
>> 7f7fc8a4c000-7f7fc8a4d000 rw-p 0000e000 fc:00 260173
>> /usr/lib/perl/5.18.2/auto/Compress/Raw/Zlib/Zlib.so
>> 7f7fc8a4d000-7f7fc8a53000 r-xp 00000000 fc:00 260228
>> /usr/lib/perl/5.18.2/auto/File/Glob/Glob.so
>> 7f7fc8a53000-7f7fc8c52000 ---p 00006000 fc:00 260228
>> /usr/lib/perl/5.18.2/auto/File/Glob/Glob.so
>> 7f7fc8c52000-7f7fc8c53000 r--p 00005000 fc:00 260228
>> /usr/lib/perl/5.18.2/auto/File/Glob/Glob.so
>> 7f7fc8c53000-7f7fc8c54000 rw-p 00006000 fc:00 260228
>> /usr/lib/perl/5.18.2/auto/File/Glob/Glob.so
>> 7f7fc8c54000-7f7fc8c5c000 r-xp 00000000 fc:00 260282
>> /usr/lib/perl/5.18.2/auto/Socket/Socket.so
>> 7f7fc8c5c000-7f7fc8e5c000 ---p 00008000 fc:00 260282
>> /usr/lib/perl/5.18.2/auto/Socket/Socket.so
>> 7f7fc8e5c000-7f7fc8e5e000 r--p 00008000 fc:00 260282
>> /usr/lib/perl/5.18.2/auto/Socket/Socket.so
>> 7f7fc8e5e000-7f7fc8e5f000 rw-p 0000a000 fc:00 260282
>> /usr/lib/perl/5.18.2/auto/Socket/Socket.so
>> 7f7fc8e5f000-7f7fc8e63000 r-xp 00000000 fc:00 260192
>> /usr/lib/perl/5.18.2/auto/Digest/MD5/MD5.so
>> 7f7fc8e63000-7f7fc9062000 ---p 00004000 fc:00 260192
>> /usr/lib/perl/5.18.2/auto/Digest/MD5/MD5.so
>> 7f7fc9062000-7f7fc9063000 r--p 00003000 fc:00 260192
>> /usr/lib/perl/5.18.2/auto/Digest/MD5/MD5.so
>> 7f7fc9063000-7f7fc9064000 rw-p 00004000 fc:00 260192
>> /usr/lib/perl/5.18.2/auto/Digest/MD5/MD5.so
>> 7f7fc9064000-7f7fc9066000 r-xp 00000000 fc:00 260176
>> /usr/lib/perl/5.18.2/auto/Cwd/Cwd.so
>> 7f7fc9066000-7f7fc9265000 ---p 00002000 fc:00 260176
>> /usr/lib/perl/5.18.2/auto/Cwd/Cwd.so
>> 7f7fc9265000-7f7fc9266000 r--p 00001000 fc:00 260176
>> /usr/lib/perl/5.18.2/auto/Cwd/Cwd.so
>> 7f7fc9266000-7f7fc9267000 rw-p 00002000 fc:00 260176
>> /usr/lib/perl/5.18.2/auto/Cwd/Cwd.so
>> 7f7fc9267000-7f7fc927e000 r-xp 00000000 fc:00 395859
>> /lib/x86_64-linux-gnu/libresolv-2.19.so
>> 7f7fc927e000-7f7fc947e000 ---p 00017000 fc:00 395859
>> /lib/x86_64-linux-gnu/libresolv-2.19.so
>> 7f7fc947e000-7f7fc947f000 r--p 00017000 fc:00 395859
>> /lib/x86_64-linux-gnu/libresolv-2.19.so
>> 7f7fc947f000-7f7fc9480000 rw-p 00018000 fc:00 395859
>> /lib/x86_64-linux-gnu/libresolv-2.19.so
>> 7f7fc9480000-7f7fc9482000 rw-p 00000000 00:00 0
>> 7f7fc9482000-7f7fc9487000 r-xp 00000000 fc:00 395806
>> /lib/x86_64-linux-gnu/libnss_dns-2.19.so
>> 7f7fc9487000-7f7fc9686000 ---p 00005000 fc:00 395806
>> /lib/x86_64-linux-gnu/libnss_dns-2.19.so
>> 7f7fc9686000-7f7fc9687000 r--p 00004000 fc:00 395806
>> /lib/x86_64-linux-gnu/libnss_dns-2.19.so
>> 7f7fc9687000-7f7fc9688000 rw-p 00005000 fc:00 395806
>> /lib/x86_64-linux-gnu/libnss_dns-2.19.so
>> 7f7fc9688000-7f7fc968a000 r-xp 00000000 fc:00 395814
>> /lib/x86_64-linux-gnu/libnss_mdns4_minimal.so.2
>> 7f7fc968a000-7f7fc9889000 ---p 00002000 fc:00 395814
>> /lib/x86_64-linux-gnu/libnss_mdns4_minimal.so.2
>> 7f7fc9889000-7f7fc988a000 r--p 00001000 fc:00 395814
>> /lib/x86_64-linux-gnu/libnss_mdns4_minimal.so.2
>> 7f7fc988a000-7f7fc988b000 rw-p 00002000 fc:00 395814
>> /lib/x86_64-linux-gnu/libnss_mdns4_minimal.so.2
>> 7f7fc988b000-7f7fc9896000 r-xp 00000000 fc:00 395808
>> /lib/x86_64-linux-gnu/libnss_files-2.19.so
>> 7f7fc9896000-7f7fc9a95000 ---p 0000b000 fc:00 395808
>> /lib/x86_64-linux-gnu/libnss_files-2.19.so
>> 7f7fc9a95000-7f7fc9a96000 r--p 0000a000 fc:00 395808
>> /lib/x86_64-linux-gnu/libnss_files-2.19.so
>> 7f7fc9a96000-7f7fc9a97000 rw-p 0000b000 fc:00 395808
>> /lib/x86_64-linux-gnu/libnss_files-2.19.so
>> 7f7fc9a97000-7f7fc9aad000 r-xp 00000000 fc:00 395760
>> /lib/x86_64-linux-gnu/libgcc_s.so.1
>> 7f7fc9aad000-7f7fc9cac000 ---p 00016000 fc:00 395760
>> /lib/x86_64-linux-gnu/libgcc_s.so.1
>> 7f7fc9cac000-7f7fc9cad000 rw-p 00015000 fc:00 395760
>> /lib/x86_64-linux-gnu/libgcc_s.so.1
>> 7f7fc9cad000-7f7fc9cae000 ---p 00000000 00:00 0
>> 7f7fc9cae000-7f7fca4ae000 rw-p 00000000 00:00 0
>> 7f7fca4ae000-7f7fca4c6000 r-xp 00000000 fc:00 395896
>> /lib/x86_64-linux-gnu/libz.so.1.2.8
>> 7f7fca4c6000-7f7fca6c5000 ---p 00018000 fc:00 395896
>> /lib/x86_64-linux-gnu/libz.so.1.2.8
>> 7f7fca6c5000-7f7fca6c6000 r--p 00017000 fc:00 395896
>> /lib/x86_64-linux-gnu/libz.so.1.2.8
>> 7f7fca6c6000-7f7fca6c7000 rw-p 00018000 fc:00 395896
>> /lib/x86_64-linux-gnu/libz.so.1.2.8
>> 7f7fca6c7000-7f7fca977000 r-xp 00000000 fc:00 183788
>> /usr/lib/x86_64-linux-gnu/libmysqlclient.so.18.0.0
>> 7f7fca977000-7f7fcab77000 ---p 002b0000 fc:00 183788
>> /usr/lib/x86_64-linux-gnu/libmysqlclient.so.18.0.0
>> 7f7fcab77000-7f7fcab7c000 r--p 002b0000 fc:00 183788
>> /usr/lib/x86_64-linux-gnu/libmysqlclient.so.18.0.0
>> 7f7fcab7c000-7f7fcabfa000 rw-p 002b5000 fc:00 183788
>> /usr/lib/x86_64-linux-gnu/libmysqlclient.so.18.0.0
>> 7f7fcabfa000-7f7fcabff000 rw-p 00000000 00:00 0
>> 7f7fcabff000-7f7fcac19000 r-xp 00000000 fc:00 183957
>> /usr/lib/perl5/auto/DBD/mysql/mysql.so
>> 7f7fcac19000-7f7fcae19000 ---p 0001a000 fc:00 183957
>> /usr/lib/perl5/auto/DBD/mysql/mysql.so
>> 7f7fcae19000-7f7fcae1b000 r--p 0001a000 fc:00 183957
>> /usr/lib/perl5/auto/DBD/mysql/mysql.so
>> 7f7fcae1b000-7f7fcae1c000 rw-p 0001c000 fc:00 183957
>> /usr/lib/perl5/auto/DBD/mysql/mysql.so
>> 7f7fcae1c000-7f7fcae24000 r-xp 00000000 fc:00 260182
>> /usr/lib/perl/5.18.2/auto/Data/Dumper/Dumper.so
>> 7f7fcae24000-7f7fcb023000 ---p 00008000 fc:00 260182
>> /usr/lib/perl/5.18.2/auto/Data/Dumper/Dumper.so
>> 7f7fcb023000-7f7fcb024000 r--p 00007000 fc:00 260182
>> /usr/lib/perl/5.18.2/auto/Data/Dumper/Dumper.so
>> 7f7fcb024000-7f7fcb025000 rw-p 00008000 fc:00 260182
>> /usr/lib/perl/5.18.2/auto/Data/Dumper/Dumper.so
>> 7f7fcb025000-7f7fcb02c000 r-xp 00000000 fc:00 395861
>> /lib/x86_64-linux-gnu/librt-2.19.so
>> 7f7fcb02c000-7f7fcb22b000 ---p 00007000 fc:00 395861
>> /lib/x86_64-linux-gnu/librt-2.19.so
>> 7f7fcb22b000-7f7fcb22c000 r--p 00006000 fc:00 395861
>> /lib/x86_64-linux-gnu/librt-2.19.so
>> 7f7fcb22c000-7f7fcb22d000 rw-p 00007000 fc:00 395861
>> /lib/x86_64-linux-gnu/librt-2.19.so
>> 7f7fcb22d000-7f7fcb232000 r-xp 00000000 fc:00 260301
>> /usr/lib/perl/5.18.2/auto/Time/HiRes/HiRes.so
>> 7f7fcb232000-7f7fcb431000 ---p 00005000 fc:00 260301
>> /usr/lib/perl/5.18.2/auto/Time/HiRes/HiRes.so
>> 7f7fcb431000-7f7fcb432000 r--p 00004000 fc:00 260301
>> /usr/lib/perl/5.18.2/auto/Time/HiRes/HiRes.so
>> 7f7fcb432000-7f7fcb433000 rw-p 00005000 fc:00 260301
>> /usr/lib/perl/5.18.2/auto/Time/HiRes/HiRes.so
>> 7f7fcb433000-7f7fcb435000 r-xp 00000000 fc:00 260297
>> /usr/lib/perl/5.18.2/auto/Tie/Hash/NamedCapture/NamedCapture.so
>> 7f7fcb435000-7f7fcb634000 ---p 00002000 fc:00 260297
>> /usr/lib/perl/5.18.2/auto/Tie/Hash/NamedCapture/NamedCapture.so
>> 7f7fcb634000-7f7fcb635000 r--p 00001000 fc:00 260297
>> /usr/lib/perl/5.18.2/auto/Tie/Hash/NamedCapture/NamedCapture.so
>> 7f7fcb635000-7f7fcb636000 rw-p 00002000 fc:00 260297
>> /usr/lib/perl/5.18.2/auto/Tie/Hash/NamedCapture/NamedCapture.so
>> 7f7fcb636000-7f7fcb63b000 r-xp 00000000 fc:00 260251
>> /usr/lib/perl/5.18.2/auto/List/Util/Util.so
>> 7f7fcb63b000-7f7fcb83b000 ---p 00005000 fc:00 260251
>> /usr/lib/perl/5.18.2/auto/List/Util/Util.so
>> 7f7fcb83b000-7f7fcb83c000 r--p 00005000 fc:00 260251
>> /usr/lib/perl/5.18.2/auto/List/Util/Util.so
>> 7f7fcb83c000-7f7fcb83d000 rw-p 00006000 fc:00 260251
>> /usr/lib/perl/5.18.2/auto/List/Util/Util.so
>> 7f7fcb83d000-7f7fcb85b000 r-xp 00000000 fc:00 183894
>> /usr/lib/perl5/auto/DBI/DBI.so
>> 7f7fcb85b000-7f7fcba5a000 ---p 0001e000 fc:00 183894
>> /usr/lib/perl5/auto/DBI/DBI.so
>> 7f7fcba5a000-7f7fcba5b000 r--p 0001d000 fc:00 183894
>> /usr/lib/perl5/auto/DBI/DBI.so
>> 7f7fcba5b000-7f7fcba5c000 rw-p 0001e000 fc:00 183894
>> /usr/lib/perl5/auto/DBI/DBI.so
>> 7f7fcba5c000-7f7fcba60000 r-xp 00000000 fc:00 260245
>> /usr/lib/perl/5.18.2/auto/IO/IO.so
>> 7f7fcba60000-7f7fcbc5f000 ---p 00004000 fc:00 260245
>> /usr/lib/perl/5.18.2/auto/IO/IO.so
>> 7f7fcbc5f000-7f7fcbc60000 r--p 00003000 fc:00 260245
>> /usr/lib/perl/5.18.2/auto/IO/IO.so
>> 7f7fcbc60000-7f7fcbc61000 rw-p 00004000 fc:00 260245
>> /usr/lib/perl/5.18.2/auto/IO/IO.so
>> 7f7fcbc61000-7f7fcbc73000 r-xp 00000000 fc:00 260266
>> /usr/lib/perl/5.18.2/auto/POSIX/POSIX.so
>> 7f7fcbc73000-7f7fcbe72000 ---p 00012000 fc:00 260266
>> /usr/lib/perl/5.18.2/auto/POSIX/POSIX.so
>> 7f7fcbe72000-7f7fcbe75000 r--p 00011000 fc:00 260266
>> /usr/lib/perl/5.18.2/auto/POSIX/POSIX.so
>> 7f7fcbe75000-7f7fcbe76000 rw-p 00014000 fc:00 260266
>> /usr/lib/perl/5.18.2/auto/POSIX/POSIX.so
>> 7f7fcbe76000-7f7fcbe79000 r-xp 00000000 fc:00 260222
>> /usr/lib/perl/5.18.2/auto/Fcntl/Fcntl.so
>> 7f7fcbe79000-7f7fcc079000 ---p 00003000 fc:00 260222
>> /usr/lib/perl/5.18.2/auto/Fcntl/Fcntl.so
>> 7f7fcc079000-7f7fcc07a000 r--p 00003000 fc:00 260222
>> /usr/lib/perl/5.18.2/auto/Fcntl/Fcntl.so
>> 7f7fcc07a000-7f7fcc07b000 rw-p 00004000 fc:00 260222
>> /usr/lib/perl/5.18.2/auto/Fcntl/Fcntl.so
>> 7f7fcc07b000-7f7fcc75d000 r--p 00000000 fc:00 140924
>> /usr/lib/locale/locale-archive
>> 7f7fcc75d000-7f7fcc766000 r-xp 00000000 fc:00 395743
>> /lib/x86_64-linux-gnu/libcrypt-2.19.so
>> 7f7fcc766000-7f7fcc966000 ---p 00009000 fc:00 395743
>> /lib/x86_64-linux-gnu/libcrypt-2.19.so
>> 7f7fcc966000-7f7fcc967000 r--p 00009000 fc:00 395743
>> /lib/x86_64-linux-gnu/libcrypt-2.19.so
>> 7f7fcc967000-7f7fcc968000 rw-p 0000a000 fc:00 395743
>> /lib/x86_64-linux-gnu/libcrypt-2.19.so
>> [2]+ Aborted (core dumped) perl tryit_crash.pl > tic.out
>>
>>
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