[ensembl-dev] How to check which Human genome build?
hoor.al-hasani at izi.fraunhofer.de
Tue Feb 16 12:31:16 GMT 2016
I've used port 3337 to obtain GRCh37 this weekend and worked absolutely fine.
Al-Hasani Hoor M.Sc.
Fraunhofer Institut für Zelltherapie und Immunologie (IZI)
Tel: +49 341 35536-5260
Fax: +49 341 35536-9920
Email: click "reply"
Von: dev-bounces at ensembl.org [dev-bounces at ensembl.org]" im Auftrag von "Christian Cole (Staff) [C.Cole at dundee.ac.uk]
Gesendet: Dienstag, 16. Februar 2016 13:23
An: Ensembl developers list
Betreff: [MASSMAIL][ensembl-dev] How to check which Human genome build?
I've just noticed that the GRCh37 perl API connection is only maintained for the current and previous release. Connecting to the GRCh37 port of 3306 on any other releases gives you GRCh38 data with no warning.
How do I find out explicitly which human genome build I'm using without assuming the port connection gives me what I want?
Also, would it be possible to report a warning that although I'm connecting to port 3306 via an older release, the data is still GRCh38?
Dr Christian Cole
Co-ordinator, The Data Analysis Group
The Barton Group
Division of Computational Biology, School of Life Sciences,
University of Dundee, Dundee, UK.
Tel:+44 1382 388721
The University of Dundee is a registered Scottish Charity, No: SC015096
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