[ensembl-dev] Ensemble GRCh38 Transcript ID

[Matthew Laird]

Hello Pankaj,

Those are version numbers, they've been a part of Ensembl stable ids 
since the start but not always displayed in every context, you can read 
more about the rules for how they're incremented here:

http://www.ensembl.org/info/genome/stable_ids/versions.html

Biomart does not accept versioned stable ids in queries, if you're 
submitting a batch of stable ids to Biomart you must ensure they are 
unversioned.

Cheers.

On 21/12/16 12:52, Pankaj Agarwal wrote:
>
> Hi,
>
> The Ensembl Transcript IDs for the GRCh38 version has periods at the 
> end followed by a number.  For ex:
>
> ENST00000414852.1
>
> ENST00000390399.3
>
> ENST00000610439.4
>
> When I query these in biomart it does not work.  I have remove the 
> period and the following number.
>
> I was wondering why these were introduced, what they mean, and how to 
> get these to work with Biomart.
>
> Thanks,
>
> - Pankaj
>
> -----------------------------
>
> Pankaj Agarwal, M.S
>
> Bioinformatician
>
> Data Analyst
>
> Applied Therapeutics
>
> Div. of Surgical Sciences
>
> Dept. of Surgery
>
> Duke University
>
> M: 919-244-6389
>
> O: 919-681-2251
>
> p.agarwal at duke.edu <mailto:p.agarwal at duke.edu>
>
>
>
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> Posting guidelines and subscribe/unsubscribe info: http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20161221/14367d88/attachment.html>