[ensembl-dev] about performance of VEP and GO plugin

Will McLaren wm2 at ebi.ac.uk
Mon Dec 19 11:42:45 GMT 2016


You would need the core database for your species of interest. MySQL dump
files are available from ftp://ftp.ensembl.org/pub/release-87/mysql/.

You could then point VEP to your MySQL server with the database on it with
the --host, --port, --user and --pass flags.


Will McLaren
Ensembl Variation

On 17 December 2016 at 02:08, csardas Gan <csardas at gmail.com> wrote:

> hi all,
> I tried to enable GO plugin in VEP
> the plugin query database over internet
> that make the speed of processing variants slow down from 2500 vars/sec to
> 19 vars/sec
> is it possible to query a local-installed database or cache?
> and which mysql database I should download?
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