[ensembl-dev] VEP Cache Gene List

[Will McLaren]

Hi Michael,

I assume from this that you are using the GRCh37 assembly? Ensembl and
therefore VEP annotations on GRCh37 were frozen at Ensembl release 75 as we
have moved our main annotation pipelines to GRCh38.

See the about box on the RH side of http://grch37.ensembl.org/index.html

Regards

Will McLaren
Ensembl Variation

On 3 August 2016 at 06:41, Michael Milton <michael.milton at unimelb.edu.au>
wrote:

> Hi, I'm using VEP with a downloaded cache, and it seems that VEP is
> annotating some non-hgnc gene symbols or at least outdated symbols. I need
> a gene list including all possible genes that VEP could output for a
> downstream application. Is there a definitive list of genes that VEP could
> output? Otherwise, what source is used to build the VEP cache?
>
>
> Some of the superceded gene symbols it's outputting, using the Ensembl 83
> refseq cache, are:
>
>
>    - GLTPD1
>    - C1orf86
>    - C7orf63
>    - PCNXL3
>
> Thanks!
>
>
>
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