[ensembl-dev] Variant external references: MIM_MORBID

Guillermo Marco Puche guillermo.marco at sistemasgenomicos.com
Mon Apr 4 11:46:20 BST 2016


Dear devs,

Up to VEP version 83 I was using the following code in a plugin to 
retrieve gene OMIM related information.

     my @db_entries = @{$gene->get_all_DBEntries()};
     foreach my $db_entry(@db_entries){
         if ($db_entry->dbname eq "MIM_GENE"){
             $mim_id = $db_entry->primary_id;
         }
         if ($db_entry->dbname eq "MIM_MORBID"){
             push(@mim_morbid_ids, $db_entry->primary_id);
         }
     }

However since I've updated to VEP 84 I don't get any MIM_MORBID db_entry 
associated to any gene. Has this been removed or changed location?

Best regards,
Guillermo.

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