[ensembl-dev] Help with cpg in genebuild process

[Rishi Nag]

Hi HuNie

We are sorry, but we currently cannot provide the source for the program we use. The algorithm the CpG island detection program is based on an 
algorithm described in a paper: Frank Larsen, Glenn Gundersen, Rodrigo Lopez, Hans Prydz, CpG islands as gene markers in the human genome, Genomics, 
Volume 13, Issue 4, August 1992, Pages 1095-1107, ISSN 0888-7543, 10.1016/0888-7543(92)90024-M.

Also please be aware that information in the ensembl-doc repository is for archival purposes only and is not being updated.

Regards

Rishi


On 17/10/2015 10:23, 蛮讲理的我 wrote:
> Hello，Ensembl dev，
>      What is your Cpg program source? I can not find in the
> ensembl-doc/pipeline_docs/the_raw_computes.txt
> ------------------------------------------------------------------------------------------------------------------------------------------------------
> HuNie,
> SiChuan University,ChengDu,China
>
>
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