[ensembl-dev] How can i use 1000Genomes Phase3 data in VEP version79

[Will McLaren]

Quoting from the above link:

"1000 Genomes Phase 3 data is available from release 79 in GRCh37 cache
files; simply use --gmaf
<http://www.ensembl.org/info/docs/tools/vep/script/vep_options.html#opt_gmaf>
 and/or --maf_1kg
<http://www.ensembl.org/info/docs/tools/vep/script/vep_options.html#opt_maf_1kg>
to
retrieve frequency data."

On 25 March 2015 at 10:52, namchul ghim <chulghim at gmail.com> wrote:

> this guide is about GRCh38. but  my vcf file is GRCh37 version.
> How can do it?
>
>
>
> On Wed, Mar 25, 2015 at 6:12 PM, Will McLaren <wm2 at ebi.ac.uk> wrote:
>
>> Hello,
>>
>> We've prepared a short guide specifically for this, take a look:
>>
>> http://www.ensembl.org/info/docs/tools/vep/script/vep_example.html#1kg_p3
>>
>> Regards
>>
>> Will McLaren
>> Ensembl Variation
>>
>> On 25 March 2015 at 06:21, namchul ghim <chulghim at gmail.com> wrote:
>>
>>> When i run vep v79, how can i add 1000Genomes Phase3 information ?
>>>
>>>
>>>
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