[ensembl-dev] ENSEMBL | Issue in downloading ftp.ensembl.org/release-79/mysql/*/*.sql.gz file

Mekala, Swapnika (Ext) swapnika.mekala at novartis.com
Tue Mar 24 10:42:19 GMT 2015


Hi,



CHECKSUM.gz file has been downloaded properly, thanks for the fix provided.



Now we face problem with *.sql.gz file in all the organism folders. After data download, while performing the integrity check, we get the following error:



"vicugna_pacos_core_79_1.sql.gz was meant to have a checksum of 36887 5 but got 17749 5 in .../ensembl/release-79/mysql/vicugna_pacos_core_79_1"



Could you please look into this?



Thanks & Regards,

Swapnika



-----Original Message-----
From: dev-bounces at ensembl.org [mailto:dev-bounces at ensembl.org] On Behalf Of Mekala, Swapnika (Ext)
Sent: Friday, March 20, 2015 4:26 PM
To: Ensembl developers list
Cc: Madhusoodanan, Nandana (Ext)
Subject: Re: [ensembl-dev] ENSEMBL | No required permission to download ftp.ensembl.org/release-79/mysql/*/CHECKSUMS.gz file



Hi Amonida,



Thank you!



Best Regards,

Swapnika



-----Original Message-----

From: dev-bounces at ensembl.org<mailto:dev-bounces at ensembl.org> [mailto:dev-bounces at ensembl.org] On Behalf Of Amonida Zadissa

Sent: Friday, March 20, 2015 4:19 PM

To: Ensembl developers list

Cc: Madhusoodanan, Nandana (Ext)

Subject: Re: [ensembl-dev] ENSEMBL | No required permission to download ftp.ensembl.org/release-79/mysql/*/CHECKSUMS.gz<ftp://ftp.ensembl.org/release-79/mysql/*/CHECKSUMS.gz> file



Hi there,



This has now been fixed on the FTP site, sorry for the inconvenience.



Best regards,

Amonida



On 20/03/2015 09:56, Mekala, Swapnika (Ext) wrote:

> Hi,

>

> We are from Ensembl support team. We are trying to download the latest release of Ensembl application; i.e. release-79 to our environment.

> The compressed sql and txt files are getting downloaded properly, but not CHECKSUMS.gz file. The only uncommon thing we observed in the same organism folder among other releases is "permissions".

> Example, at ftp.ensembl.org:/pub/release-79/mysql/xiphophorus_maculatus_rnaseq_79_1/<ftp://ftp.ensembl.org:/pub/release-79/mysql/xiphophorus_maculatus_rnaseq_79_1/<ftp://ftp.ensembl.org:/pub/release-79/mysql/xiphophorus_maculatus_rnaseq_79_1/<ftp:/ftp.ensembl.org:/pub/release-79/mysql/xiphophorus_maculatus_rnaseq_79_1/>>, CHECKSUMZ.gz file has only r & x permissions "-r-xr-x---". Whereas in release-78, CHEKCSUMS.gz file has w permission "-rwxrwxr-x" also.

> Could you please let us know how can we get the CHECKSUMS.gz file to our environment?

>

> Thanks & Regards,

> Swapnika Mekala

>

>

>

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