[ensembl-dev] VEP tissue expression

[Will McLaren]

Hi Nikolas,

There is nothing in the core code that I can think of; regulatory features
can be reported on a cell-type basis (see
http://www.ensembl.org/info/docs/tools/vep/script/vep_options.html#opt_cell_type),
but I don't think this is what you're after.

You may find something of use in the VAX suite of plugins, see
https://github.com/myourshaw/vax and
http://bib.oxfordjournals.org/content/early/2014/03/12/bib.bbu008.full

Regards

Will McLaren
Ensembl Variation

On 23 March 2015 at 11:08, Nikolas Pontikos <n.pontikos at ucl.ac.uk> wrote:

> Is there some way of including "tissue expression" in the variant
> annotation?
> I have seen that there is a GO plugin so I could use that, but was
> wondering if there was anything else?
>
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