[ensembl-dev] ApoC3 is missing
Rishi Nag
rishi at ebi.ac.uk
Thu Mar 19 15:59:35 GMT 2015
Hi Sebastien
Yes, typically the protein needs to be a certain evidence level backed by RNASeq or cDNA/EST data to provide a gene model. If we can't make an
alignment of the protein to the genome though, there will be no model to build. The genebuild process will attempt a number of alignment techniques -
for a more detailed look at the process used for the chicken annotation is in a document at:
http://www.ensembl.org/info/genome/genebuild/2013_04_chicken_genebuild.pdf
Regards,
Rishi
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