[ensembl-dev] Stop-retained frameshift

[Will McLaren]

Thanks, we've seen a similar case before I believe.

We'll take a look at updating the code for our next release (changing
consequence predicate code is a bit more involved than the usual bug fix).

Will

On 13 July 2015 at 15:49, Konrad Karczewski <konradk at broadinstitute.org>
wrote:

> Hi Will/VEP,
>
> Me again. We found a fairly exotic corner case variant (
> http://exac.broadinstitute.org/variant/1-204159611-CT-C): it's annotated
> in VEP as a "frameshift" (confirmed it does the same in v80) that deletes
> the last base of a transcript, but actually results in a stop-retained
> variant, so I suppose in a sense be a synonymous-like variant?
>
> Thanks!
> -Konrad
>
>
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