[ensembl-dev] Allele_num = "?"

[Will McLaren]

Hi Konrad,

Thanks, this is a bug when using --minimal. This is fixed on release/80 now.

Will

On 7 July 2015 at 14:51, Konrad Karczewski <konradk at broadinstitute.org>
wrote:

> Hi Will/VEP team,
>
> Found something unexpected when annotating ExAC with VEP v80. The
> following variant:
>
> 1    139345  .       CGTT    C,TGTT
>
> seems to annotate without error/warnings, but for some of the entries,
> ALLELE_NUM is `?` - the first few I checked seem to be
> upstream_gene_variant and the like, so I'm assuming maybe this means both
> alleles get the same annotation, but I can't find anything in the
> documentation.
>
> Any information you might have would be very helpful.
>
> Thanks!
> -Konrad
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