[ensembl-dev] VEP retrieve HGVS

Guillermo Marco Puche guillermo.marco at sistemasgenomicos.com
Thu Jan 29 08:39:05 GMT 2015


Dear devs,

If --hgvs option is enabled when running VEP is it possible to retrieve 
HGVS for each transcript?
I've been looking the documentation Will referenced me in previous post,

At first I thought I could retrieve it from "mapper"
my $mapper = $vf->transcript->{_variation_effect_feature_cache}->{mapper};

however I've inspected the hash and I couldn't find it.

Regards,
Guillermo.
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