[ensembl-dev] VEP retrieve HGVS
Guillermo Marco Puche
guillermo.marco at sistemasgenomicos.com
Thu Jan 29 08:39:05 GMT 2015
Dear devs,
If --hgvs option is enabled when running VEP is it possible to retrieve
HGVS for each transcript?
I've been looking the documentation Will referenced me in previous post,
At first I thought I could retrieve it from "mapper"
my $mapper = $vf->transcript->{_variation_effect_feature_cache}->{mapper};
however I've inspected the hash and I couldn't find it.
Regards,
Guillermo.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20150129/9908e546/attachment.html>
More information about the Dev
mailing list