[ensembl-dev] VEP GRCh37 REST returns incorrect start position for deletion?

[Will McLaren]

Hello,

Apologies, this is a bug in our API code.

We'll get a patch pushed out to the servers soon.

Regards

Will McLaren
Ensembl Variation

On 13 February 2015 at 14:00, ls <lshen86 at gmail.com> wrote:

> The VEP returned start position is same as stop position, which is
> suspicious for me.
>
> http://grch37.rest.ensembl.org/vep/human/hgvs/1:g.
> 19377071_19377074del?content-type=application/json
>
>
> [{"assembly_name":"GRCh37","end":19377074,"seq_region_
> name":"1","strand":1,"id":"1:g.19377071_19377074del","
> intergenic_consequences":[{"consequence_terms":["intergenic_variant"]}],"
> allele_string":"CCCG/-","most_severe_consequence":"
> intergenic_variant","start":19377074}]
>
>
> OR with delCCCG in input:
> http://grch37.rest.ensembl.org/vep/human/hgvs/1:g.
> 19377071_19377074delCCCG?content-type=application/json
>
> [{"assembly_name":"GRCh37","end":19377074,"seq_region_
> name":"1","strand":1,"id":"1:g.19377071_19377074delCCCG","
> intergenic_consequences":[{"consequence_terms":["intergenic_variant"]}],"
> allele_string":"CCCG/-","most_severe_consequence":"
> intergenic_variant","start":19377074}]
>
>
>
>
> # my reformatted text:
>
> Input:  1:g.19377071_19377074del
>
> VEP output:
>
> Assembly_name : GRCh37
> Chromosome : 1
> Start : 19377074
> End : 19377074
> ID : 1:g.19377071_19377074del
> Allele_string : CCCG/-
> Most_severe_consequence : intergenic_variant
> HGVS_g: 1:g.19377074delCCCG
>
>
>
>
> Lishuang Shen
>
>
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