[ensembl-dev] configuring bigbed sources

Olson, Andrew olson at cshl.edu
Mon Feb 9 18:28:31 GMT 2015


I have a bigbed track that works when you add it in the browser, but I’d like to configure my server to display it automatically. There is an error when using this configuration (excerpt below). I based this on a working bigwig configuration.

Can't use an undefined value as a HASH reference at /usr/local/ensembl-live/ensembl-webcode/modules/EnsEMBL/Web/Lazy/Object.pm line 21.\n

[ENSEMBL_INTERNAL_BIGBED_SOURCES]
HClncRNAs = mrna_prot

[HClncRNAs]
source_name = HC_lncRNAs
description = High Confidence lncRNAs
source_url = http://myserver/data/Zea_mays/HC-lncRNAs.bb<http://brie.cshl.edu/data/Zea_mays/HC-lncRNAs.bb>
source_type = bigbed


Any idea what I might be missing?

Andrew


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