[ensembl-dev] Variant Effect Predictor error

[Radhika Bartaula]

Hi Magali,
Thank you very much for quick response. I did try with the -genomes option but still getting the error below.

UNIVERSAL->import is deprecated and will be removed in a future perl at /home/radhika/ensembl-tools-release-78/scripts/variant_effect_predictor/Bio/Tree/TreeFunctionsI.pm line 94.

ERROR: No cache found for triticum_aestivum, version 78

Based on the comments found at the link, I thought it might be because of the version issue.
http://comments.gmane.org/gmane.science.biology.ensembl.devel/9198

So, I changed the version to 77, this is the error I get when I change the version.

perl variant_effect_predictor.pl -i /berber/radhika/seq_for_assaf/mpileup_on_rmdup/Zavitan_var.flt_d6_a4.vcf -genomes --species triticum_aestivum --cache -db_version 77

UNIVERSAL->import is deprecated and will be removed in a future perl at /home/radhika/ensembl-tools-release-78/scripts/variant_effect_predictor/Bio/Tree/TreeFunctionsI.pm line 94.

For triticum_aestivum_core_24_77_1 there is a difference in the software release (78) and the database release (77). You should update one of these to ensure that your script does not crash.
For triticum_aestivum_variation_24_77_1 there is a difference in the software release (78) and the database release (77). You should update one of these to ensure that your script does not crash.
ERROR: No cache found for triticum_aestivum, version 77

Thank you,
Radhika



On Feb 3, 2015, at 4:46 PM, <mr6 at ebi.ac.uk<mailto:mr6 at ebi.ac.uk>> <mr6 at ebi.ac.uk<mailto:mr6 at ebi.ac.uk>> wrote:

Public
database server

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