[ensembl-dev] VEP: --vcf_info_field ANN only seems to change VCF header, not INFO

[Will McLaren]

Whoops, thanks for the report Cyriac.

Fixed now on release/79, release/80 and release/81

Will

On 14 August 2015 at 02:13, Cyriac Kandoth <kandoth at cbio.mskcc.org> wrote:

> This is the command used:
> perl variant_effect_predictor.pl --species homo_sapiens --assembly GRCh37
> --offline --quiet --no_stats --everything --shift_hgvs 1 --check_existing
> --check_alleles --check_ref --total_length --allele_number --no_escape
> --xref_refseq --failed 1 --vcf --vcf_info_field ANN --flag_pick_allele
> --pick_order canonical,tsl,biotype,rank,ccds,length --dir $vep_data --fasta
> $ref_fasta
>
> Where $vep_data and $ref_fasta are paths to the offline cache and
> reference fasta respectively.
>
> ~Cyriac
>
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