[ensembl-dev] VEP plugin Conservation

[Kirsley Chennen]

Hi Will,
             Am still having the same issue with the latest version of 
the Convervation.pm plugin :

2015-08-13 15:31:17 - Failed to instantiate plugin Conservation: Failed 
to connect to compara database


Do we have to the config for the database in the vep.ini file?

     # reconnect to DB without species param
     my $config = $self->{config};
     $reg->load_registry_from_db(
         -host       => $config->{host},
         -user       => $config->{user},
         -pass       => $config->{password},
         -port       => $config->{port},
         -db_version => $config->{db_version},
         -no_cache   => $config->{no_slice_cache},
     );

If that's so, what are the parameters for the GRCh37 human assembly?

Regards
Kirsley


On 13/08/2015 14:46, Will McLaren wrote:
> Hi Guillermo,
>
> Thanks for the report, I've pushed a fix to the plugin on GitHub.
>
> Regards
>
> Will
>
> On 13 August 2015 at 12:36, Guillermo Marco Puche 
> <guillermo.marco at sistemasgenomicos.com 
> <mailto:guillermo.marco at sistemasgenomicos.com>> wrote:
>
>     Dear devs,
>
>     I'm using latest version of VEP Conservation plugin available in
>     github. However it's not working for me:
>
>     2015-08-13 13:35:17 - Failed to instantiate plugin Conservation:
>     Failed to connect to compara database
>
>     Is this a bug?
>
>     Regards,
>     Guillermo.
>
>
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