[ensembl-dev] VEP

Sarah Hunt seh at ebi.ac.uk
Wed Aug 5 16:11:39 BST 2015


Hi Igo,

We take the SIFT code from http://sift.bii.a-star.edu.sg/. The current 
release uses version 5.2.2 and UniRef90 (release 2014_11) as the protein 
database. This changes when new versions are released but you can always 
find the current information here:

http://www.ensembl.org/info/genome/variation/predicted_data.html#sift

Best wishes,

Sarah

On 05/08/2015 15:59, Igo Medeiros wrote:
> Hi VEP Team,
> The SIFT used in VEP is from http://sift.jcvi.org or 
> http://sift.bii.a-star.edu.sg/?
>
>
> 2015-08-05 10:21 GMT-03:00 Igo Medeiros <igo701 at gmail.com 
> <mailto:igo701 at gmail.com>>:
>
>     Hi Ensembl Team,
>     I didn't find in documentation what protein's database used in the
>     VEP. Do you know what protein's database used?
>
>     -- 
>     Igo Paixão de Medeiros
>
>
>
>
> -- 
> Igo Paixão de Medeiros
>
>
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