[ensembl-dev] VEP
Sarah Hunt
seh at ebi.ac.uk
Wed Aug 5 16:11:39 BST 2015
Hi Igo,
We take the SIFT code from http://sift.bii.a-star.edu.sg/. The current
release uses version 5.2.2 and UniRef90 (release 2014_11) as the protein
database. This changes when new versions are released but you can always
find the current information here:
http://www.ensembl.org/info/genome/variation/predicted_data.html#sift
Best wishes,
Sarah
On 05/08/2015 15:59, Igo Medeiros wrote:
> Hi VEP Team,
> The SIFT used in VEP is from http://sift.jcvi.org or
> http://sift.bii.a-star.edu.sg/?
>
>
> 2015-08-05 10:21 GMT-03:00 Igo Medeiros <igo701 at gmail.com
> <mailto:igo701 at gmail.com>>:
>
> Hi Ensembl Team,
> I didn't find in documentation what protein's database used in the
> VEP. Do you know what protein's database used?
>
> --
> Igo Paixão de Medeiros
>
>
>
>
> --
> Igo Paixão de Medeiros
>
>
> _______________________________________________
> Dev mailing list Dev at ensembl.org
> Posting guidelines and subscribe/unsubscribe info: http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20150805/5c77acde/attachment.html>
More information about the Dev
mailing list