[ensembl-dev] Pfam and transmembrane domain coordinates in BiomaRt

Thomas Maurel maurel at ebi.ac.uk
Fri Apr 17 10:44:01 BST 2015

Dear Greg,

I am afraid that domain coordinates are not available in the Ensembl Gene mart at the moment but we are looking into adding this in the future since we already had few requests.

Thanks a lot for your feedback.
> On 17 Apr 2015, at 10:35, Greg Slodkowicz <gregs at ebi.ac.uk> wrote:
> Hi Ensembl team,
> I'm trying to fetch Pfam and transmembrane domain annotations using the biomaRt package. I noticed that while there are attributes for the annotations themselves ('pfam' and 'transmembrane_domain'), there seem to be no attributes for the coordinates of these domains. Is there a way to get them?
> Many thanks,
> Greg
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Thomas Maurel
Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Cambridge CB10 1SD
United Kingdom

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