[ensembl-dev] About "Use of uninitialized value message ~~~~"
Sarah Hunt
seh at ebi.ac.uk
Thu Apr 9 10:44:10 BST 2015
Hi Namchul,
The message may indicate missing results. Could you supply more
information on how you are using VEP? I assume you are using one of the
release79 caches? Do you have any examples of VCF lines triggering the
message?
Thanks,
Sarah
On 09/04/2015 02:20, namchul ghim wrote:
> I got the following error message during annotating whole genome vcf
> file.
> These messages doesn't affect the result. is it right?
>
>
> Use of uninitialized value in hash element at
> /mnt/lustre/Tools/VEP/src/ensembl-tools-release-79/scripts/variant_effect_predictor/Bio/EnsEMBL/Variation/VariationFeature.pm
> line 718.
>
> Use of uninitialized value $stable_id in pattern match(//m) at
> /mnt/lustre/Tools/VEP/src/ensembl-tools-release-79/scripts/variant_effect_predictor/Bio/EnsEMBL/Variation/TranscriptVariationAllele.pm
> line 670.
>
>
>
>
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