[ensembl-dev] About "Use of uninitialized value message ~~~~"

Sarah Hunt seh at ebi.ac.uk
Thu Apr 9 10:44:10 BST 2015


Hi Namchul,

The message may indicate missing results. Could you supply more 
information on how you are using VEP? I assume you are using one of the 
release79 caches? Do you have any examples of VCF lines triggering the 
message?

Thanks,

Sarah

On 09/04/2015 02:20, namchul ghim wrote:
> I got the following error message during annotating  whole genome vcf 
> file.
> These messages doesn't affect the result.  is it right?
>
>
> Use of uninitialized value in hash element at 
> /mnt/lustre/Tools/VEP/src/ensembl-tools-release-79/scripts/variant_effect_predictor/Bio/EnsEMBL/Variation/VariationFeature.pm 
> line 718.
>
> Use of uninitialized value $stable_id in pattern match(//m) at 
> /mnt/lustre/Tools/VEP/src/ensembl-tools-release-79/scripts/variant_effect_predictor/Bio/EnsEMBL/Variation/TranscriptVariationAllele.pm 
> line 670.
>
>
>
>
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> Posting guidelines and subscribe/unsubscribe info: http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20150409/261e0775/attachment.html>


More information about the Dev mailing list