[ensembl-dev] Mouse genes discrepancies
Genomeo Dev
genomeodev at gmail.com
Thu Jun 19 12:58:14 BST 2014
Hi,
I wanted to dig out some mouse genes from Ensembl using old symbols of
which I don't know the source. I am getting this discrepancy:
1) Between Ensembl website and API (75):
B930076A02
The website found this:
http://www.ensembl.org/Multi/Search/Results?q=B930076A02;site=ensembl
my $registry = 'Bio::EnsEMBL::Registry';
$registry->load_registry_from_db(
-host => 'ensembldb.ensembl.org',
-user => 'anonymous'
);
my $gene_adaptor = Bio::EnsEMBL::Registry->get_adaptor( "mouse", "core",
"gene" );
my $genes = $gene_adaptor->fetch_all_by_external_name('B930076A02');
This code found nothing.
2) Ensmebl does not recognise these names while NCBI does:
LOC232400
LOC241525
http://www.ncbi.nlm.nih.gov/gene/?term=LOC232400
http://www.ncbi.nlm.nih.gov/gene/?term=LOC241525
Thanks,
--
G.
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