[ensembl-dev] VEP on Gorilla

Yuan Chen yuan at sanger.ac.uk
Thu Jun 5 03:38:25 BST 2014


Hi Will,

I have a gorilla variant :
11	91630310	.	A	G

if I use species gorilla_gorilla, then I got error message :
Can't call method "db" on unblessed reference at /nfs/team19/yuan/ensembl-checkout/ensembl-variation-75/modules/Bio/EnsEMBL/Variation/TranscriptVariation.pm line 322, <GEN0> line 9

if I use other species, such as homo_sapiens, then it’s fine with same config file, only species is different.
WEB tool on gorilla runs fine as well.

Could you help on this please.

yuan
-------------- next part --------------
A non-text attachment was scrubbed...
Name: smime.p7s
Type: application/pkcs7-signature
Size: 2056 bytes
Desc: not available
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20140605/a2aaf156/attachment.p7s>


More information about the Dev mailing list