[ensembl-dev] exon rank in transcript

[Guillermo Marco Puche]

Hello David,

If you've the Ensembl Exon ID you can query it's rank, supposing you're 
using BioMart:
This is a logical approach Gene ID -> Transcript ID -> Exon ID -> Exon Rank

http://www.ensembl.org/biomart/martview/787d31359f27ce07ff49c75236f027b0


If you've exon ID list you can go straight to get it's rank.

$query->addAttribute("rank");


Best regards,
Guillermo.

On 07/25/2014 03:36 PM, David Salgado wrote:
> Dear developers,
>
> Is there a way, from an exon stable identifier, to get its rank within 
> a particular transcript using the Ensembl Core API , without comparing 
> start and end positions?
> Many thanks in advance for any tips,
>
> David
>
>
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