[ensembl-dev] Mouse phenotypes in ensembl API

Anja Thormann anja at ebi.ac.uk
Wed Jul 23 16:52:10 BST 2014

Hello Nathalie,

we have only genes associated with phenotypes for mouse. You need to use fetch_all_by_Gene.

Kind regards,

On 23 Jul 2014, at 16:46, Nathalie Conte wrote:

> Hi , 
> Is there mouse phenotypes available through the ensembl API ?
> I am trying to retrieve mouse phenotypes from the API using the phenotype feature adaptor = Bio::EnsEMBL::Registry->get_adaptor('mouse', 'variation', 'phenotypefeature'),
> using fetch_all_by_Variation method, and cannot retrieve any -
> Please advise,
> Thanks,
> Nathalie
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