[ensembl-dev] FW: downstream.pm VEP plugin

[Manuel Tardáguila Sancho]

To whom it may concern,
My name is Manuel Tardaguila and I am an MSC in bioinformatics doing a project in the university of Lausanne. I am working on annotated variations using VEP and snpEff as annotators.
For frameshift variants I have to calculate downstream effects and I have found this plugin made by your team. I have a question that I would be very grateful if you could address; 
As happens with other VEP plugins, I suppose that downstream plugin is called from VEP command line when the program is run. In case I have an annotated output from a different program (i.e. snpEff) would it be possible to adapt the plugin or run it separately of VEP?
Thanks in advance for your time and patience,
From: manueltar at hotmail.com
To: dev at ensembl.org
Subject: downstream.pm VEP plugin
Date: Mon, 7 Jul 2014 13:33:57 +0200




Dear Mr Mclaren,
My name is Manuel Tardaguila and I am an MSC in bioinformatics doing a project in the university of Lausanne. I am working on annotated variations using VEP and snpEff as annotators.
For frameshift variants I have to calculate downstream effects and I have found this plugin made by your team. I have a question that I would be very grateful if you could address; 
As happens with other VEP plugins, I suppose that downstream plugin is called from VEP command line when the program is run. In case I have an annotated output from a different program (i.e. snpEff) would it be possible to adapt the plugin or run it separately of VEP?
Thanks in advance for your time and patience, 		 	   		   		 	   		  
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