[ensembl-dev] VEP Term::ReadKey error

[William McLaren]

Hi Michael,

Thanks for spotting this - I've put in a fix which will go live in 75.

Will McLaren
Ensembl Variation

On 31 Jan 2014, at 01:46, Michael Yourshaw wrote:

> I have just begun to notice a non-destructive error with the Variant Effect Predictor:
> 
> Unable to get Terminal Size. The TIOCGWINSZ ioctl didn't work. The COLUMNS and LINES environment variables didn't work. The resize program didn't work. The stty program didn't work. at /home/myourshaw/apps/ActivePerl-5.18/site/lib/Term/ReadKey.pm line 426.
> 
> This originates with line 1212 in VEP 74
>                 ($w, $h) = GetTerminalSize();
> and the actual error comes in ReadKey.pm line 339
>         @results = GetTermSizeGWINSZ($file);
> 
> I don’t remember seeing this before VEP 74, but we recently updated our Perl installation from 5.16 to 5.18 and it is possible that the previous one either did not have Term::ReadKey installed or it behaved differently.
> 
> The error seems to be harmless, but it does put something in STDERR and our users like to see that be empty.
> 
> We actually run with the progress bar turned off. You might want to consider not running GetTerminalSize if it is not needed for the progress bar.
> 
> ॐ
> 
> 
> Michael Yourshaw, PhD
> UCLA Geffen School of Medicine
> Department of Pediatrics
> 695 Charles E Young Drive S
> Gonda 5554
> Los Angeles CA 90095-8348 USA
> myourshaw at ucla.edu
> 970.691.8299
> 
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