[ensembl-dev] MarkerAdaptor

[mag]

Hi Will,

The markers currently stored in the core databases are being loaded 
using the scripts in
ensembl-analysis/scripts/markers
This does not use the API.


Regards,
Magali

On 28/02/2014 16:00, Will Chow wrote:
> Hi Dev'ers,
>
> I'm trying to store some Marker data in to a ensembl schema database 
> using the API.
>
> I've created the marker features as per.
>   $marker = Bio::EnsEMBL::Map::Marker->new
>                              (undef, undef,
>                   $left_primer, $right_primer, 400,
>                   80, $ms1, [$ms1, $ms2], [$mloc1, $mloc2]);
> added the marker synonyms and marker_map_locations (e.g. ms & msloc);
>
> then i guess would use the marker_adaptor->store($marker);
>
> however looking at the MarkerAdaptor.pm code for the store call, Line 405
>
>     403     # Loop through all MapLocations and store if needed
>     404     foreach my $loc( @{$marker->get_all_MapLocations} ){
>     405       # Dunno how to implement this :( Just bomb out
>     406       $self->throw( 'Storing of MapLocation objects is not yet 
> implemented' )
>     407     }
>
> Does this mean the MapLocations which I've linked to the marker 
> feature won't be stored? Has anyone used the API to store marker data?
>
> Or maybe its just friday, and I've stared at the code for too long 
> this week.
>
>
> thanks,
>
> Will
>
>
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