[ensembl-dev] Xenbase Xref in Ensembl

Sébastien Moretti sebastien.moretti at unil.ch
Tue Feb 25 14:41:44 GMT 2014


Thanks Magali I can see it now (not very convenient this name).

Do you also store the XenBase id (e.g. XB-GENE-6076969 for your example) 
as you do for Zebrafish with zfin_id ?

> Hi Sebastien,
>
> External references from Xenbase are stored in Ensembl under the
> external_db name Xenopus_Jamboree and displayed under the name Jamboree.
>
> As you can see on the gene page
> http://www.ensembl.org/Xenopus_tropicalis/Gene/Matches?g=ENSXETG00000014526;r=GL172656.1:1913116-1927218;t=ENSXETT00000031783
>
> the Xenbase external references are also used as official gene names for
> Xenopus.
>
>
> Hope that helps,
> Magali
>
> On 25/02/2014 13:51, Sébastien Moretti wrote:
>> Hi
>>
>> I wonder why I cannot find external references to XenBase for Xenopus
>> genes in Ensembl.
>>
>> Did I miss them or is there a reason?
>>
>> Thanks

-- 
Sébastien Moretti
Department of Ecology and Evolution,
Biophore, University of Lausanne,
CH-1015 Lausanne, Switzerland
Tel.: +41 (21) 692 4221/4079
http://selectome.unil.ch/ http://bgee.unil.ch/




More information about the Dev mailing list