[ensembl-dev] GO adaptor in latest ensemblgenomes release

[Simon Andrews]

The latest ensemblgenomes release (just downloaded from the website - http://cvs.sanger.ac.uk/cgi-bin/viewvc.cgi/ensembl.tar.gz?root=ensembl&only_with_tag=branch-ensemblgenomes-21-74&view=tar) doesn't allow me to get a GO adapter to use in our scripts.

#!/usr/bin/perl
use warnings;
use strict;
use lib ("/home/andrewss/EnsemblAPI/bioperl-live");
use lib ("/home/andrewss/EnsemblAPI/plants/ensembl/modules");
use Bio::EnsEMBL::Registry;
use Bio::EnsEMBL::DBSQL::OntologyDBAdaptor;

 warn "Loading Registry information - please be patient\n";

  my $registry = 'Bio::EnsEMBL::Registry';

  $registry->load_registry_from_db(
                                 -host => 'mysql.ebi.ac.uk',
                                 -port => 4157,
                                 -user => 'anonymous'
                                );

#  $registry -> set_disconnect_when_inactive(1);

  my $ontology_dba = Bio::EnsEMBL::DBSQL::OntologyDBAdaptor -> new (
                                                                    -SPECIES => 'Multi',
                                                                    -GROUP => 'ontology',
                                                                    -HOST => 'mysql.ebi.ac.uk',
                                                                    -PORT => 4157,
                                                                    -USER => 'anonymous',
                                                                    -DBNAME => 'ensemblgenomes_ontology_10_63',
                                                                   );

my $GO_adapter =   $registry->get_adaptor( 'Multi', 'Ontology', 'GOTerm' );

DBD::mysql::st execute failed: Unknown column 'species_id' in 'where clause' at /home/andrewss/EnsemblAPI/plants/ensembl/modules/Bio/EnsEMBL/DBSQL/BaseMetaContainer.pm line 139.
DBD::mysql::st execute failed: Unknown column 'species_id' in 'where clause' at /home/andrewss/EnsemblAPI/plants/ensembl/modules/Bio/EnsEMBL/DBSQL/BaseMetaContainer.pm line 139.

Any ideas?

Thanks

Simon.

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