[ensembl-dev] Rattus norvegicus Rnor_6.0 and Bos taurus UMD_3.1.1 in Ensembl

[Joel Fillon, Mr]

Hi Dan,

No pb, I'll wait until next year for the cow boys!

Thanks and Merry Christmas!
Joël
________________________________________
De : dev-bounces at ensembl.org [dev-bounces at ensembl.org] de la part de Daniel Barrell [dbarrell at ebi.ac.uk]
Envoyé : mercredi 24 décembre 2014 04:19
À : Ensembl developers list
Cc : Louis Letourneau; Mathieu Bourgey
Objet : Re: [ensembl-dev] Rattus norvegicus Rnor_6.0 and Bos taurus UMD_3.1.1 in Ensembl

Hi Joël,

I'm afraid you'll have to wait until after the holidays for a definitive
answer on Bos taurus. I'm just the rat-guy!

Dan

On 23/12/14 19:44, Joel Fillon, Mr wrote:
> Hi Dan,
>
> Actually, regarding Bos taurus, do you plan to add the version Baylor Btau_4.6.1 (UCSC bosTau7):
>
> http://www.ncbi.nlm.nih.gov/assembly/GCF_000003205.5/
> https://www.hgsc.bcm.edu/other-mammals/bovine-genome-project
>
> Or did you just skip this one due to quality, lack of time or other?
>
> Thanks
> Joël
>
>
> ________________________________________
> De : dev-bounces at ensembl.org [dev-bounces at ensembl.org] de la part de Daniel Barrell [dbarrell at ebi.ac.uk]
> Envoyé : mardi 23 décembre 2014 05:03
> À : dev at ensembl.org
> Objet : Re: [ensembl-dev] Rattus norvegicus Rnor_6.0 and Bos taurus UMD_3.1.1 in Ensembl
>
> Hi Joël,
>
> With regards to rat, we have just completed an Ensembl Pre! (http://pre.ensembl.org/index.html) site which will be made public in January for Rnor_6.0. The full gene annotation is due for release in e80 (mid 2015).
>
> At the moment we have cow UMD_3.1 available at http://www.ensembl.org/Bos_taurus/Info/Index which corresponds to GenBank Assembly ID GCA_000003055.3<http://www.ncbi.nlm.nih.gov/genome/assembly/?term=GCA_000003055.3>.
>
> I hope that helps,
>
> Dan
>
> On 22/12/14 20:10, Joel Fillon, Mr wrote:
>
> Hi Ensembl people,
>
> Is there any plan to add assemblies Rattus norvegicus Rnor_6.0 (July 2014)
> http://redmine.soe.ucsc.edu/forum/index.php?t=msg&goto=16668
> ftp://ftp.hgsc.bcm.edu/Rnorvegicus/Rnor6.0/
>
> and Bos taurus UMD_3.1.1/(UCSC bosTau8) (June 2014)
> http://www.ncbi.nlm.nih.gov/assembly/189361
>
> in the future Ensembl versions?
>
> Thanks for your help
> Joël
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