[ensembl-dev] Rattus norvegicus Rnor_6.0 and Bos taurus UMD_3.1.1 in Ensembl

Daniel Barrell dbarrell at ebi.ac.uk
Tue Dec 23 10:03:17 GMT 2014


Hi Joël,

With regards to rat, we have just completed an Ensembl Pre! 
(http://pre.ensembl.org/index.html) site which will be made public in 
January for Rnor_6.0. The full gene annotation is due for release in e80 
(mid 2015).

At the moment we have cow UMD_3.1 available at 
http://www.ensembl.org/Bos_taurus/Info/Index which corresponds to 
GenBank Assembly ID 
GCA_000003055.3<http://www.ncbi.nlm.nih.gov/genome/assembly/?term=GCA_000003055.3>.

I hope that helps,

Dan

On 22/12/14 20:10, Joel Fillon, Mr wrote:
> Hi Ensembl people,
>
> Is there any plan to add assemblies Rattus norvegicus Rnor_6.0 (July 2014)
> http://redmine.soe.ucsc.edu/forum/index.php?t=msg&goto=16668
> ftp://ftp.hgsc.bcm.edu/Rnorvegicus/Rnor6.0/
>
> and Bos taurus UMD_3.1.1/(UCSC bosTau8) (June 2014)
> http://www.ncbi.nlm.nih.gov/assembly/189361
>
> in the future Ensembl versions?
>
> Thanks for your help
> Joël
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