[ensembl-dev] Error when using variation set adaptor

[Sarah Hunt]

Hi Naz,

Thanks for reporting this - it is now fixed in branch77 .

Best wishes,

Sarah

On 04/12/2014 13:08, Nazmiye Uzun wrote:
> Dear developers
>
> I am trying to test below code snippet provided on the 
> variation_tutorial page to display attributes of the variations in a 
> particular variation set. Here's a section of the code from the 
> following page;
>
> http://www.ensembl.org/info/docs/api/variation/variation_tutorial.html#variation_sets 
>
>
>
>
> my $vs_adaptor = 
> $registry->get_adaptor('human','variation','variationset');
> my $vs = $vs_adaptor->fetch_by_short_name('ph_variants');
>
> my $limit = 10;
> my $fetched = 0;
> my $it = $vs->get_Variation_Iterator();
>
> # Get the first 10 examples and print some data from them
>   while ($fetched < $limit && $it->has_next()) {
>
>     # Print the name of the variation
>     my $var = $it->next();
>     printf("\t\%s has been found to be associated with:\n",$var->name());
>
>     #
>     # Do more
>     #
>
>     $fetched++;
>   }
>
>
> However, I receive the following error:
> DBD::mysql::st execute failed: Unknown column 'v.display' in 'where 
> clause' at 
> -----/src/ensembl-variation/modules/Bio/EnsEMBL/Variation/DBSQL/VariationAdaptor.pm 
> line 1173.
>
> The version of the API I'm using is 77.
>
> I appreciate any input. Thanks for the help in advance.
>
> Regards
> Naz
>
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