[ensembl-dev] UniProt, UniRef and InterPro accessions

[mag]

Hi G,

There are no source-specific methods.

For a given gene, you can use the get_all_DBLinks method, which will 
return all the external references linked to that object.
The method can take a source name argument, so you can use 
get_all_DBLinks('Uniprot%') to fetch only Uniprot external references.

Else, you can fetch all external references then filter on the dbname 
argument.

my $xrefs = $gene->get_all_DBLinks
while (my $xref = shift @$xrefs) {
   if ($xref->dbname eq 'Uniprot/SPTREMBL') {
   } elsif ($xref->dbname eq 'Uniprot/SWISSPROT') {
   }
}


Hope that helps,
Magali

On 11/03/2014 13:49, Genomeo Dev wrote:
> Hi,
>
> I would like to pull for all Ensembl gene IDs using Ensembl API, the 
> following:
>
> UniProt/TrEMBL Accession
> UniProt/SwissProt Accession
> UniRef Accession
> InterPro Accession
>
> Looking at the documentation I have only found interpro_ac() to pull 
> the InterPro Accession. Are there functions to pull the other accessions?
>
> Thanks,
>
> -- 
> G.
>
>
>
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